3EIN | pdb_00003ein

Delta class GST

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.13 Å
  • R-Value Free: 
    0.157 (Depositor), 0.162 (DCC) 
  • R-Value Work: 
    0.140 (Depositor), 0.148 (DCC) 
  • R-Value Observed: 
    0.141 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3EIN

Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history. 

Literature

Probing insect detoxification systems

Feil, S.C., Low, W.Y., Ng, H.L., Pyke, J., Gooley, P., Parker, M.W., Robin, C., McConville, M., Batterham, P.

To be published.

Macromolecule Content 

  • Total Structure Weight: 24.2 kDa 
  • Atom Count: 2,026 
  • Modeled Residue Count: 207 
  • Deposited Residue Count: 209 
  • Unique protein chains: 1

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glutathione S-transferase 1-1209Drosophila melanogasterMutation(s): 0 
Gene Names: GstD1, GST, Gst1, CG10045
EC: 2.5.1.18 (PDB Primary Data), 4.5.1.1 (UniProt)
UniProt
Find proteins for P20432 (Drosophila melanogaster)
Explore P20432 
Go to UniProtKB:  P20432
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20432
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GSH

Query on GSH


Download:Ideal Coordinates CCD File
B [auth A]Glutathione
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N

Biologically Interesting Molecules (External Reference) 

1 Unique

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.13 Å
  • R-Value Free:  0.157 (Depositor), 0.162 (DCC) 
  • R-Value Work:  0.140 (Depositor), 0.148 (DCC) 
  • R-Value Observed: 0.141 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.775α = 90
b = 63.212β = 129.84
c = 54.513γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


View more in-depth experimental data

Entry History 

Deposition Data

  • Released Date: 2009-09-01 
    • Deposition Author(s): Feil, S.C.

Revision History  (Full details and data files)

  • Version 1.0: 2009-09-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-12-21
    Changes: Non-polymer description
  • Version 1.3: 2017-10-25
    Changes: Refinement description
  • Version 1.4: 2024-03-20
    Changes: Data collection, Database references, Derived calculations