3EH7

The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83

Cuff, M.E.Duggan, E.Gu, M.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
4-hydroxybutyrate CoA-transferase
A
434Porphyromonas gingivalis (strain ATCC BAA-308 / W83)Mutation(s): 0 
Gene Names: abfT-1
Find proteins for Q7MWD3 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83))
Go to UniProtKB:  Q7MWD3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.171 
  • Space Group: P 32 1 2
Unit Cell:
Length (Å)Angle (°)
a = 72.704α = 90.00
b = 72.704β = 90.00
c = 133.694γ = 120.00
Software Package:
Software NamePurpose
RESOLVEphasing
SCALEPACKdata scaling
CCP4phasing
DENZOdata reduction
HKL-3000data scaling
SHELXDphasing
HKL-3000data reduction
PDB_EXTRACTdata extraction
SOLVEphasing
MLPHAREphasing
HKL-3000phasing
ARP/wARPmodel building
REFMACrefinement
SBC-Collectdata collection
Cootmodel building
DMphasing
SHELXEmodel building
Omodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-12-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description