3ED5

The crystal structure of YfnB from Bacillus subtilis subsp. subtilis str. 168


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of YfnB from Bacillus subtilis subsp. subtilis str. 168

Tan, K.Wu, R.Jedrzejczak, R.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YfnB
A
238Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yfnB
EC: 3.-.-.-
Find proteins for O06480 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O06480
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMT
Query on FMT

Download SDF File 
Download CCD File 
A
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.171 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 91.186α = 90.00
b = 91.186β = 90.00
c = 68.253γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
SHELXDphasing
RESOLVEmodel building
HKL-3000phasing
RESOLVEphasing
DMphasing
HKL-3000data reduction
MLPHAREphasing
HKL-3000data scaling
SBC-Collectdata collection
DMmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-09-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance