3E98

CRYSTAL STRUCTURE OF a GAF domain containing protein that belongs to Pfam DUF484 family (PA5279) FROM PSEUDOMONAS AERUGINOSA AT 2.43 A RESOLUTION

PDB DOI: 10.2210/pdb3E98/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-08-21 Released: 2008-09-02
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.43 Å
R-Value Free: 0.270
R-Value Work: 0.211
R-Value Observed: 0.214

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a GAF Domain with Unknown Function (NP_253966.1) from PSEUDOMONAS AERUGINOSA at 2.43 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GAF Domain of Unknown Function	A, B	252	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: NP_253966.1, orf2332, PA5279, yigA, CAZ10_32075, CGU42_16960, DT376_20065, E4V10_25705, E5D53_32675, E5Z62_16365... NP_253966.1, orf2332, PA5279, yigA, CAZ10_32075, CGU42_16960, DT376_20065, E4V10_25705, E5D53_32675, E5Z62_16365, E5Z63_23675, ECC04_031390, GNQ48_12740, GUL26_21900, IPC111_11895, IPC112_13475, IPC113_22530, IPC114_16955, IPC115_20375, IPC116_23525, IPC117_25355, IPC118_26410, IPC119_24870, IPC120_26155, IPC121_21085, IPC122_22540, IPC123_28795, IPC124_13425, IPC125_17260, IPC126_13620, IPC127_15125, IPC128_10625, IPC1295_10680, IPC129_12875, IPC1306_08090, IPC1308_07980, IPC130_14030, IPC1310_18340, IPC1312_27490, IPC1313_13265, IPC1314_23575, IPC1315_14195, IPC1316_03550, IPC1317_21595, IPC1318_25490, IPC1319_28710, IPC131_02520, IPC1320_22195, IPC1321_13940, IPC1322_07760, IPC1323_08380, IPC1324_08385, IPC1325_28445, IPC1326_03120, IPC1327_03120, IPC1328_14735, IPC1329_16740, IPC132_06640, IPC1331_27930, IPC1332_29155, IPC1334_25075, IPC1335_28595, IPC1336_08955, IPC1337_29275, IPC1339_29060, IPC133_03090, IPC1340_28450, IPC1341_12865, IPC1342_25325, IPC1343_03095, IPC1345_26365, IPC1346_12210, IPC1347_06270, IPC1348_28215, IPC1349_02225, IPC134_02515, IPC135_03090, IPC137_05440, IPC139_09020, IPC140_06460, IPC141_03095, IPC142_06990, IPC143_28055, IPC144_27580, IPC145_26295, IPC146_07605, IPC1474_29095, IPC1476_05015, IPC1477_00475, IPC1478_21260, IPC1479_05560, IPC147_27260, IPC1480_09590, IPC1481_07830, IPC1482_03120, IPC1485_08575, IPC1486_00695, IPC1487_09460, IPC1488_09785, IPC1489_04605, IPC148_13190, IPC1490_08845, IPC1491_03320, IPC1492_28925, IPC1495_13115, IPC1496_07465, IPC1499_04890, IPC149_07600, IPC1500_13680, IPC1501_16415, IPC1502_23940, IPC1503_12275, IPC1504_12145, IPC1505_29555, IPC1506_17140, IPC1507_23885, IPC1508_07865, IPC1509_10980, IPC150_28350, IPC1510_02450, IPC1511_10535, IPC1512_29390, IPC1513_08470, IPC1515_25110, IPC1516_24760, IPC1517_08455, IPC1518_22815, IPC1519_07600, IPC151_23925, IPC1520_00495, IPC1521_08105, IPC1522_07940, IPC1523_29655, IPC152_29030, IPC153_23615, IPC154_17535, IPC155_18430, IPC156_17550, IPC157_21035, IPC1583_04770, IPC1584_21430, IPC1585_03085, IPC1586_11865, IPC1587_07360, IPC1588_00475, IPC1589_12580, IPC158_22745, IPC1591_03085, IPC1592_03090, IPC1593_28890, IPC1594_08610, IPC1596_07780, IPC1597_07435, IPC1598_07265, IPC1599_12250, IPC159_19945, IPC1600_03355, IPC1601_25675, IPC1602_28590, IPC1603_04750, IPC1604_17010, IPC1605_06710, IPC1606_26265, IPC161_21205, IPC162_18205, IPC163_16570, IPC164_17020, IPC165_16575, IPC166_17890, IPC167_16195, IPC168_27485, IPC169_16595, IPC170_16885, IPC171_11415, IPC172_03095, IPC173_03095, IPC174_03845, IPC175_28260, IPC176_00470, IPC177_24090, IPC178_12375, IPC179_02955, IPC180_03170, IPC181_03170, IPC182_27140, IPC183_07350, IPC184_23475, IPC26_03500, IPC29_26090, IPC30_25505, IPC31_26060, IPC32_23625, IPC33_16535, IPC34_07380, IPC35_07375, IPC36_11715, IPC37_10745, IPC38_07655, IPC40_27200, IPC41_03090, IPC42_03090, IPC43_22815, IPC44_22545, IPC45_21635, IPC46_06885, IPC47_03115, IPC48_27090, IPC49_03090, IPC50_31880, IPC51_29105, IPC54_18440, IPC55_15825, IPC56_25575, IPC574_05920, IPC575_14090, IPC576_08140, IPC577_10345, IPC578_05920, IPC579_06355, IPC580_13880, IPC582_05915, IPC584_14580, IPC586_05925, IPC589_15145, IPC596_08120, IPC597_03805, IPC598_09355, IPC599_08855, IPC59_12130, IPC600_09060, IPC601_08510, IPC602_08930, IPC603_03100, IPC604_03080, IPC605_03080, IPC606_24710, IPC608_28325, IPC609_14030, IPC60_11340, IPC610_24775, IPC611_03360, IPC612_03355, IPC613_03355, IPC614_09985, IPC615_03380, IPC616_03380, IPC618_03375, IPC61_27420, IPC620_03395, IPC621_01995, IPC622_09870, IPC623_28985, IPC624_03120, IPC625_10485, IPC627_06650, IPC629_12350, IPC630_04930, IPC632_00470, IPC633_27575, IPC634_00470, IPC64_26900, IPC65_28320, IPC66_27590, IPC67_03380, IPC68_03150, IPC70_17005, IPC71_27275, IPC72_28725, IPC737_07950, IPC73_26995, IPC74_13850, IPC75_18060, IPC76_17065, IPC77_27580, IPC78_11850, NCTC13621_05299, PA52Ts2_0442, PAMH19_3037
UniProt
Find proteins for Q51565 (Pseudomonas aeruginosa) Explore Q51565 Go to UniProtKB: Q51565
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q51565
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A]	C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.43 Å
R-Value Free: 0.270
R-Value Work: 0.211
R-Value Observed: 0.214
Space Group: P 1 2₁ 1
Diffraction Data DOI: 10.18430/M33E98

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.841	α = 90
b = 88.114	β = 107.92
c = 60.963	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
SHELX	phasing
MolProbity	model building
SCALA	data scaling
PDB_EXTRACT	data extraction
MOSFLM	data reduction
autoSHARP	phasing
SHELXD	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-09-02

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Revision History (Full details and data files)

Version 1.0: 2008-09-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description
Version 1.4: 2023-02-01
Changes: Database references, Derived calculations