3E98

CRYSTAL STRUCTURE OF a GAF domain containing protein that belongs to Pfam DUF484 family (PA5279) FROM PSEUDOMONAS AERUGINOSA AT 2.43 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal structure of a GAF Domain with Unknown Function (NP_253966.1) from PSEUDOMONAS AERUGINOSA at 2.43 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GAF Domain of Unknown FunctionA, B252Pseudomonas aeruginosaMutation(s): 0 
Gene Names: 
NP_253966.1orf2332PA5279yigACAZ10_32075CGU42_16960DT376_20065E4V10_25705E5D53_32675E5Z62_16365E5Z63_23675ECC04_031390GNQ48_12740GUL26_21900IPC111_11895IPC112_13475IPC113_22530IPC114_16955IPC115_20375IPC116_23525IPC117_25355IPC118_26410IPC119_24870IPC120_26155IPC121_21085IPC122_22540IPC123_28795IPC124_13425IPC125_17260IPC126_13620IPC127_15125IPC128_10625IPC1295_10680IPC129_12875IPC1306_08090IPC1308_07980IPC130_14030IPC1310_18340IPC1312_27490IPC1313_13265IPC1314_23575IPC1315_14195IPC1316_03550IPC1317_21595IPC1318_25490IPC1319_28710IPC131_02520IPC1320_22195IPC1321_13940IPC1322_07760IPC1323_08380IPC1324_08385IPC1325_28445IPC1326_03120IPC1327_03120IPC1328_14735IPC1329_16740IPC132_06640IPC1331_27930IPC1332_29155IPC1334_25075IPC1335_28595IPC1336_08955IPC1337_29275IPC1339_29060IPC133_03090IPC1340_28450IPC1341_12865IPC1342_25325IPC1343_03095IPC1345_26365IPC1346_12210IPC1347_06270IPC1348_28215IPC1349_02225IPC134_02515IPC135_03090IPC137_05440IPC139_09020IPC140_06460IPC141_03095IPC142_06990IPC143_28055IPC144_27580IPC145_26295IPC146_07605IPC1474_29095IPC1476_05015IPC1477_00475IPC1478_21260IPC1479_05560IPC147_27260IPC1480_09590IPC1481_07830IPC1482_03120IPC1485_08575IPC1486_00695IPC1487_09460IPC1488_09785IPC1489_04605IPC148_13190IPC1490_08845IPC1491_03320IPC1492_28925IPC1495_13115IPC1496_07465IPC1499_04890IPC149_07600IPC1500_13680IPC1501_16415IPC1502_23940IPC1503_12275IPC1504_12145IPC1505_29555IPC1506_17140IPC1507_23885IPC1508_07865IPC1509_10980IPC150_28350IPC1510_02450IPC1511_10535IPC1512_29390IPC1513_08470IPC1515_25110IPC1516_24760IPC1517_08455IPC1518_22815IPC1519_07600IPC151_23925IPC1520_00495IPC1521_08105IPC1522_07940IPC1523_29655IPC152_29030IPC153_23615IPC154_17535IPC155_18430IPC156_17550IPC157_21035IPC1583_04770IPC1584_21430IPC1585_03085IPC1586_11865IPC1587_07360IPC1588_00475IPC1589_12580IPC158_22745IPC1591_03085IPC1592_03090IPC1593_28890IPC1594_08610IPC1596_07780IPC1597_07435IPC1598_07265IPC1599_12250IPC159_19945IPC1600_03355IPC1601_25675IPC1602_28590IPC1603_04750IPC1604_17010IPC1605_06710IPC1606_26265IPC161_21205IPC162_18205IPC163_16570IPC164_17020IPC165_16575IPC166_17890IPC167_16195IPC168_27485IPC169_16595IPC170_16885IPC171_11415IPC172_03095IPC173_03095IPC174_03845IPC175_28260IPC176_00470IPC177_24090IPC178_12375IPC179_02955IPC180_03170IPC181_03170IPC182_27140IPC183_07350IPC184_23475IPC26_03500IPC29_26090IPC30_25505IPC31_26060IPC32_23625IPC33_16535IPC34_07380IPC35_07375IPC36_11715IPC37_10745IPC38_07655IPC40_27200IPC41_03090IPC42_03090IPC43_22815IPC44_22545IPC45_21635IPC46_06885IPC47_03115IPC48_27090IPC49_03090IPC50_31880IPC51_29105IPC54_18440IPC55_15825IPC56_25575IPC574_05920IPC575_14090IPC576_08140IPC577_10345IPC578_05920IPC579_06355IPC580_13880IPC582_05915IPC584_14580IPC586_05925IPC589_15145IPC596_08120IPC597_03805IPC598_09355IPC599_08855IPC59_12130IPC600_09060IPC601_08510IPC602_08930IPC603_03100IPC604_03080IPC605_03080IPC606_24710IPC608_28325IPC609_14030IPC60_11340IPC610_24775IPC611_03360IPC612_03355IPC613_03355IPC614_09985IPC615_03380IPC616_03380IPC618_03375IPC61_27420IPC620_03395IPC621_01995IPC622_09870IPC623_28985IPC624_03120IPC625_10485IPC627_06650IPC629_12350IPC630_04930IPC632_00470IPC633_27575IPC634_00470IPC64_26900IPC65_28320IPC66_27590IPC67_03380IPC68_03150IPC70_17005IPC71_27275IPC72_28725IPC737_07950IPC73_26995IPC74_13850IPC75_18060IPC76_17065IPC77_27580IPC78_11850NCTC13621_05299PA52Ts2_0442PAMH19_3037

UniProt
Find proteins for Q51565 (Pseudomonas aeruginosa)
Explore Q51565 
Go to UniProtKB:  Q51565
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ51565
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
E [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.214 
  • Space Group: P 1 21 1
  • Diffraction Data DOI: 10.18430/M33E98
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.841α = 90
b = 88.114β = 107.92
c = 60.963γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SHELXphasing
MolProbitymodel building
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction
autoSHARPphasing
SHELXDphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-09-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description
  • Version 1.3: 2019-07-24
    Changes: Data collection, Derived calculations, Refinement description
  • Version 1.4: 2023-02-01
    Changes: Database references, Derived calculations