3E6Y

Structure of 14-3-3 in complex with the differentiation-inducing agent Cotylenin A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.200 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

A structural rationale for selective stabilization of anti-tumor interactions of 14-3-3 proteins by cotylenin A

Ottmann, C.Weyand, M.Sassa, T.Inoue, T.Kato, N.Wittinghofer, A.Oecking, C.

(2009) J Mol Biol 386: 913-919

  • DOI: https://doi.org/10.1016/j.jmb.2009.01.005
  • Primary Citation of Related Structures:  
    3E6Y

  • PubMed Abstract: 

    Cotylenin A, a fungal metabolite originally described as a cytokinin-like bioactive substance against plants shows differentiation-inducing and anti-tumor activity in certain human cancers. Here, we present the crystal structure of cotylenin A acting on a 14-3-3 regulatory protein complex. By comparison with the closely related, but non-anticancer agent fusicoccin A, a rationale for the activity of cotylenin A in human cancers is presented. This class of fusicoccane diterpenoids are possible general modulators of 14-3-3 protein-protein interactions. In this regard, specificities for individual 14-3-3/target protein complexes might be achieved by varying the substituent pattern of the diterpene ring system. As the different activities of fusicoccin A and cotylenin A in human cancers suggest, hydroxylation of C12 might be a sufficient determinant of structural specificity.


  • Organizational Affiliation

    Chemical Genomics Centre, Max Planck Society, Dortmund, Germany. christian.ottmann@cgc.mpg.de


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
14-3-3-like protein C
A, B
260Nicotiana tabacumMutation(s): 0 
UniProt
Find proteins for P93343 (Nicotiana tabacum)
Explore P93343 
Go to UniProtKB:  P93343
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP93343
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
H+-ATPase phosphopeptide QSYpTV
C, D
5N/AMutation(s): 0 
UniProt
Find proteins for Q40409 (Nicotiana plumbaginifolia)
Explore Q40409 
Go to UniProtKB:  Q40409
Entity Groups  
UniProt GroupQ40409
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
C, D
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Binding Affinity Annotations 
IDSourceBinding Affinity
CW1 Binding MOAD:  3E6Y Kd: 2500 (nM) from 1 assay(s)
PDBBind:  3E6Y Kd: 2500 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.200 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.8α = 90
b = 141.9β = 114.1
c = 51.4γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description
  • Version 1.3: 2023-08-30
    Changes: Data collection, Database references, Derived calculations, Refinement description