3E57

Crystal structure of Tm1382, a putative Nudix hydrolase

• PDB DOI: https://doi.org/10.2210/pdb3E57/pdb

• Classification: structural genomics, unknown function
• Organism(s): Thermotoga maritima
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-08-13 Released: 2008-09-30 
• Deposition Author(s): Choi, W., Cooper, D.R., Derewenda, Z.S., Integrated Center for Structure and Function Innovation (ISFI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.240 
• R-Value Work: 0.199 
• R-Value Observed: 0.201 

Literature

Crystal structure of Tm1382, a putative Nudix hydrolase

Choi, W., Cooper, D.R., Derewenda, Z.S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 49.14 kDa 
• Atom Count: 3,192 
• Modelled Residue Count: 363 
• Deposited Residue Count: 422 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein Tm1382	A, B	211	Thermotoga maritima	Mutation(s): 0  Gene Names: TM_1382
UniProt
Find proteins for Q9X1A2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X1A2  Go to UniProtKB:  Q9X1A2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.240 
• R-Value Work: 0.199 
• R-Value Observed: 0.201 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.589	α = 90
b = 62.879	β = 98.37
c = 73.896	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-30 
Deposition Author(s): Choi, W., Cooper, D.R., Derewenda, Z.S., Integrated Center for Structure and Function Innovation (ISFI)

Revision History  

• Version 1.0: 2008-09-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references