3E2I

Crystal structure of Thymidine Kinase from S. aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Thymidine Kinase from S. aureus

Lam, R.Johns, K.Battaile, K.P.Romanov, V.Lam, K.Pai, E.F.Chirgadze, N.Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Thymidine kinaseA219Staphylococcus aureusMutation(s): 0 
Gene Names: 
tdkBTN44_12945C7P97_10700CSC87_01000DD547_02154DQV53_12290E4U00_12030EP54_10835EQ90_06730ERS072840_01851FA040_09565FVP29_10565G0V24_09855G0X12_09175G0Y02_05145G0Z08_01565G6Y10_08865GF545_08835GF559_08790GO677_13995GO746_02600GO803_09430GO821_03500GO894_11255GO915_05880GO942_06275HMPREF2819_03580NCTC10654_02282NCTC10988_02503NCTC6133_02880NCTC7878_02877NCTC9944_02265RK64_11250SAMEA1029528_02118SAMEA1029547_01861SAMEA1029553_01787SAMEA1469856_02144SAMEA1469884_01942SAMEA1531680_02131SAMEA1531701_02048SAMEA1964876_01983SAMEA1965205_01970SAMEA1966505_01937SAMEA1969349_02073SAMEA1969845_02279SAMEA1971706_01835SAMEA1972827_02181SAMEA2076212_02130SAMEA2076218_02294SAMEA2076220_02282SAMEA2076226_02074SAMEA2076463_01724SAMEA2076464_01841SAMEA2076470_01817SAMEA2076472_01883SAMEA2076478_02029SAMEA2076480_01822SAMEA2076481_02081SAMEA2076743_01855SAMEA2076745_02036SAMEA2076746_01984SAMEA2076747_01965SAMEA2076749_01358SAMEA2076751_01843SAMEA2076752_01782SAMEA2076755_01737SAMEA2076756_01819SAMEA2076758_01830SAMEA2076759_01729SAMEA2076761_01292SAMEA2076762_02407SAMEA2076763_02491SAMEA2076764_01976SAMEA2076765_01871SAMEA2077023_01892SAMEA2077025_01771SAMEA2077027_01917SAMEA2077029_01876SAMEA2077031_01993SAMEA2077034_02457SAMEA2077035_01817SAMEA2077039_01816SAMEA2077040_01659SAMEA2077041_01853SAMEA2077044_02043SAMEA2077045_01737SAMEA2077046_01788SAMEA2077293_02008SAMEA2077294_01957SAMEA2077295_01921SAMEA2077297_01810SAMEA2077300_02056SAMEA2077301_01897SAMEA2077302_01757SAMEA2077303_01886SAMEA2077307_01712SAMEA2077832_01836SAMEA2078252_02086SAMEA2078256_01882SAMEA2078307_02009SAMEA2078308_01843SAMEA2078553_01915SAMEA2078558_02004SAMEA2078560_00697SAMEA2078569_02124SAMEA2078570_01930SAMEA2078572_00917SAMEA2078824_01751SAMEA2078837_01968SAMEA2079048_02175SAMEA2079051_01863SAMEA2079277_02410SAMEA2079291_02180SAMEA2079503_01900SAMEA2079507_01941SAMEA2079512_02096SAMEA2079517_01947SAMEA2079724_02058SAMEA2079727_02279SAMEA2079728_00479SAMEA2079732_02200SAMEA2079742_02213SAMEA2079946_02266SAMEA2079949_02119SAMEA2079951_02225SAMEA2079952_02284SAMEA2079957_02388SAMEA2079958_02179SAMEA2079960_02216SAMEA2079961_02239SAMEA2079968_02189SAMEA2080329_02318SAMEA2080330_02270SAMEA2080334_02287SAMEA2080433_02408SAMEA2080812_02039SAMEA2080898_01739SAMEA2080900_02091SAMEA2080904_01823SAMEA2080913_01760SAMEA2081043_02034SAMEA2081053_01835SAMEA2081054_01806SAMEA2081055_01822SAMEA2081060_02239SAMEA2081211_01815SAMEA2081213_01900SAMEA2081218_02180SAMEA2081341_02063SAMEA2081342_02173SAMEA2081349_02222SAMEA2081359_02151SAMEA2081362_02251SAMEA2081468_01871SAMEA2081474_01998SAMEA2081475_01959SAMEA2081476_01711SAMEA2081479_01782SAMEA2081480_02052SAMEA2081560_01935SAMEA2081561_01904SAMEA2081564_02057SAMEA2081567_02030SAMEA2081568_02050SAMEA2081569_01835SAMEA2081570_02057SAMEA2081571_01869SAMEA2081572_01934SAMEA2081573_01725SAMEA2081575_01849SAMEA2081577_01725SAMEA2081578_01950SAMEA2081579_01997SAMEA2081581_01674SAMEA2081582_02088SAMEA2081673_02161SAMEA2081674_02222SAMEA958766_02174SAMEA958770_00119SAMEA958772_02048SAMEA958778_01788SAMEA958779_01048SAMEA958785_01985SAMEA958793_01919SAMEA958798_01961SAMEA958804_01990SAMEA958810_02022SAMEA958836_02281SAMEA958838_01427SAMEA958845_01851SAMEA958846_01980SAMEA958848_01857SAMEA958855_01411SAMEA958858_01864SAMEA958898_00379SAMEA958906_01246SAMEA958924_01702SAMEA958925_00409SAMEA958951_00196SAMEA958953_02216SAMEA958961_01929SAMEA958979_01928SAMEA958987_01042SAMEA958995_02065SAST44_03705SAST45_04671

EC: 2.7.1.21
Find proteins for Q0H0G9 (Staphylococcus aureus)
Explore Q0H0G9 
Go to UniProtKB:  Q0H0G9
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
B [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 
  • Space Group: P 42 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.621α = 90
b = 71.621β = 90
c = 96.144γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
JDirectordata collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description