3E13 | pdb_00003e13

Iron reconstituted ferric binding protein from Campylobacter jejuni

PDB DOI: https://doi.org/10.2210/pdb3E13/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Campylobacter jejuni
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-08-01 Released: 2009-08-11
Deposition Author(s): Murphy, M.E.P., Tom-Yew, S.A.L., Bekker, E.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.186 (Depositor), 0.196 (DCC)
R-Value Work:
0.145 (Depositor), 0.159 (DCC)
R-Value Observed:
0.147 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Small hinge motion by the anion-independent ferric binding protein from Campylobacter jejuni

Tom-Yew, S.A.L., Shilton, B.H., Bekker, E.G., Gaynor, E.C., Murphy, M.E.P.

To be published.

Macromolecule Content

Total Structure Weight: 36.18 kDa
Atom Count: 2,985
Modeled Residue Count: 317
Deposited Residue Count: 322
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative iron-uptake ABC transport system,periplasmic iron-binding protein	A [auth X]	322	Campylobacter jejuni	Mutation(s): 0 Gene Names: cfbpA, Cj0175c
UniProt
Find proteins for Q0PBW4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0PBW4 Go to UniProtKB: Q0PBW4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0PBW4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth X] MOL2 format, chain B [auth X] mmCIF format, chain B [auth X]	B [auth X]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth X] Interactions & Density Focus chain B [auth X]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.186 (Depositor), 0.196 (DCC)
R-Value Work: 0.145 (Depositor), 0.159 (DCC)
R-Value Observed: 0.147 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.113	α = 90
b = 54.74	β = 90
c = 92.237	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Blu-Ice	data collection
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-08-11

Deposition Author(s):

Tom-Yew, S.A.L.

Revision History (Full details and data files)

Version 1.0: 2009-08-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.