3E0X | pdb_00003e0x

The crystal structure of a Lipase-esterase related protein from Clostridium acetobutylicum ATCC 824

• PDB DOI: https://doi.org/10.2210/pdb3E0X/pdb

• Classification: structural genomics, unknown function
• Organism(s): Clostridium acetobutylicum
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-08-01 Released: 2008-09-30 
• Deposition Author(s): Tan, K., Sather, A., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.185 (Depositor) 
• R-Value Work: 
  0.143 (Depositor), 0.145 (DCC) 
• R-Value Observed: 
  0.145 (Depositor) 

Literature

The crystal structure of a Lipase-esterase related protein from Clostridium acetobutylicum ATCC 824

Tan, K., Sather, A., Cobb, G., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 55.47 kDa 
• Atom Count: 4,771 
• Modeled Residue Count: 488 
• Deposited Residue Count: 490 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipase-esterase related protein	A, B	245	Clostridium acetobutylicum	Mutation(s): 0  Gene Names: CA_C0816
UniProt
Find proteins for Q97KV0 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)) Explore Q97KV0  Go to UniProtKB:  Q97KV0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
OXE	C [auth A], D [auth B]	ORTHO-XYLENE C8 H10 CTQNGGLPUBDAKN-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.185 (Depositor) 
• R-Value Work:  0.143 (Depositor), 0.145 (DCC) 
• R-Value Observed: 0.145 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.611	α = 90
b = 75.153	β = 97.89
c = 68.206	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
SHELXD	phasing
MLPHARE	phasing
DM	phasing
RESOLVE	phasing
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-30 
Deposition Author(s): Tan, K., Sather, A., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2008-09-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary