3DWR

Leishmania major coproporphyrinogen III oxidase with bound ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Leishmania major coproporphyrinogen III oxidase with bound ligand

Merritt, E.A.Le Trong, I.Larson, E.T.Shibata, S.Zhang, Z.Anderson, L.Ross, J.Verlinde, C.L.M.J.Buckner, F.S.Van Voorhis, W.C.Hol, G.J.W.Fan, E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Coproporphyrinogen III oxidase
A, B
309Leishmania majorMutation(s): 0 
EC: 1.3.3.3
Find proteins for P84155 (Leishmania major)
Go to UniProtKB:  P84155
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
0PA
Query on 0PA

Download SDF File 
Download CCD File 
A, B
cyclopentylacetic acid
C7 H12 O2
YVHAIVPPUIZFBA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.163 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 75.487α = 90.00
b = 48.060β = 90.06
c = 84.442γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-09-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description