Download MendeleyRadiation damage in protein structural characterization by Synchrotron Radiation: State of the art and Nanotechnology-based perspective
Pechkova, E., Tripathi, S.K., Nicolini, C.To be published.
3DVR
Proteinase K by LB nanotemplate method after the first step of high X-Ray dose on ESRF ID14-2 beamline
- PDB DOI: https://doi.org/10.2210/pdb3DVR/pdb
- Classification: HYDROLASE
- Organism(s): Parengyodontium album
- Mutation(s): No
- Deposited: 2008-07-20 Released: 2009-07-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.216
- R-Value Work: 0.207
- R-Value Observed: 0.207
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proteinase K | A [auth X] | 279 | Parengyodontium album | Mutation(s): 0 EC: 3.4.21.64 |  |
UniProt | |||||
Find proteins for P06873 (Parengyodontium album) Explore P06873 Go to UniProtKB: P06873 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06873 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth X] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.02 Å
- R-Value Free: 0.216
- R-Value Work: 0.207
- R-Value Observed: 0.207
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.963 | α = 90 |
| b = 67.963 | β = 90 |
| c = 102.196 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2009-07-07 Deposition Author(s): Pechkova, E., Tripathi, S.K., Nicolini, C.
Revision History (Full details and data files)
- Version 1.0: 2009-07-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-10-30
Changes: Structure summary
