3DKU

Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1.

Hong, M.K.Kim, J.K.Jung, J.H.Jung, J.W.Choi, J.Y.Kang, L.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative phosphohydrolase
A, B, C, D, E, F, G, H
153Escherichia coli O1:K1 / APECMutation(s): 0 
Gene Names: nudJ
EC: 3.6.1.-
Find proteins for A1AA28 (Escherichia coli O1:K1 / APEC)
Go to UniProtKB:  A1AA28
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.193 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 68.960α = 90.00
b = 70.521β = 103.30
c = 145.031γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
REFMACrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-06-30
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Author supporting evidence