Macromolecule Content

Total Structure Weight: 68.72 kDa
Atom Count: 4631
Residue Count: 535
Unique protein chains: 1

3DK3

Crystal structure of mutant ABL kinase domain in complex with small molecule fragment

DOI: 10.2210/pdb3DK3/pdb

Classification: TRANSFERASE
Organism(s): Mus musculus
Mutation(s): Yes

Deposited: 2008-06-24 Released: 2008-07-29
Deposition Author(s): Lewis, H.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.02 Å
R-Value Free: 0.248
R-Value Work: 0.213

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mutant ABL kinase domain in complex with small molecule fragment

Bounaud, P.-Y., Gosberg, A., Hendle, J., Lewis, H.A., Romero, R., Wilson, M.E., Zhang, F.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Proto-oncogene tyrosine-protein kinase ABL1	A, B	293	Mus musculus	Mutation(s): 2 Gene Names: Abl1, Abl EC: 2.7.10.2
Find proteins for P00520 (Mus musculus) Explore P00520 Go to UniProtKB: P00520
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SX7 Query on SX7 Download CCD File	A, B	2-amino-5-[3-(1-ethyl-1H-pyrazol-5-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]-N,N-dimethylbenzamide C₂₁ H₂₂ N₆ O INAGORZAOFUKOZ-UHFFFAOYSA-N		Ligand Interaction
SO4 Query on SO4 Download CCD File	B	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.02 Å
R-Value Free: 0.248
R-Value Work: 0.213
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.254	α = 90
b = 131.806	β = 90
c = 56.229	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2008-06-24
Released Date: 2008-07-29

Deposition Author(s):

Revision History

Version 1.0: 2008-07-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.