3DEX | pdb_00003dex

Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.

PDB DOI: https://doi.org/10.2210/pdb3DEX/pdb

Classification: structural genomics, unknown function
Organism(s): Streptomyces avermitilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-06-10 Released: 2008-08-05
Deposition Author(s): Forouhar, F., Neely, H., Seetharaman, J., Janjua, H., Fang, Y., Xiao, R., Cunningham, K., Ma, L.-C., Owen, L.A., Chen, C.X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.264 (Depositor), 0.279 (DCC)
R-Value Work:
0.230 (Depositor), 0.248 (DCC)
R-Value Observed:
0.230 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.

Forouhar, F., Neely, H., Seetharaman, J., Janjua, H., Fang, Y., Xiao, R., Cunningham, K., Ma, L.-C., Owen, L.A., Chen, C.X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 99.55 kDa
Atom Count: 5,209
Modeled Residue Count: 635
Deposited Residue Count: 856
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SAV_2001	A, B, C, D, E A, B, C, D, E, F, G, H	107	Streptomyces avermitilis	Mutation(s): 0 Gene Names: SAV2001, SAV_2001
UniProt
Find proteins for Q82LK9 (Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)) Explore Q82LK9 Go to UniProtKB: Q82LK9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q82LK9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.264 (Depositor), 0.279 (DCC)
R-Value Work: 0.230 (Depositor), 0.248 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.126	α = 90
b = 158.318	β = 90.62
c = 48.088	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
COMO	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-08-05

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2008-08-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-08-30
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-11-13
Changes: Structure summary