3D53

2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii.

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Inorganic pyrophosphataseA, B, C, D, E, F173Rickettsia prowazekii str. Madrid EMutation(s): 0 
Gene Names: ppaRP589
EC: 3.6.1.1
UniProt
Find proteins for Q9ZCW5 (Rickettsia prowazekii (strain Madrid E))
Explore Q9ZCW5 
Go to UniProtKB:  Q9ZCW5
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
O [auth B], S [auth C], Z [auth E]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth F] , BA [auth F] , CA [auth F] , G [auth A] , H [auth A] , I [auth A] , J [auth A] , K [auth B] , 
AA [auth F],  BA [auth F],  CA [auth F],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  K [auth B],  L [auth B],  M [auth B],  N [auth B],  P [auth C],  Q [auth C],  R [auth C],  T [auth D],  U [auth D],  V [auth D],  W [auth E],  X [auth E],  Y [auth E]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.97α = 90
b = 115.23β = 90
c = 139.73γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
MOSFLMdata reduction

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-05-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance