3D3U | pdb_00003d3u

Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis. Northeast Structural Genomics Consortium target PgR26

PDB DOI: https://doi.org/10.2210/pdb3D3U/pdb

Classification: TRANSFERASE
Organism(s): Porphyromonas gingivalis W83
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-05-12 Released: 2008-07-15
Deposition Author(s): Forouhar, F., Neely, H., Zhang, X.-Z., Price II, W.N., Hussain, M., Seetharaman, J., Xiao, R., Conover, K., Cunningham, K., Ma, L.-C., Ho, C.K., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.260 (Depositor), 0.260 (DCC)
R-Value Work:
0.199 (Depositor), 0.200 (DCC)
R-Value Observed:
0.202 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis.

Forouhar, F., Neely, H., Zhang, X.-Z., Price II, W.N., Hussain, M., Seetharaman, J., Xiao, R., Conover, K., Cunningham, K., Ma, L.-C., Ho, C.K., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 48.84 kDa
Atom Count: 3,038
Modeled Residue Count: 387
Deposited Residue Count: 439
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxybutyrate CoA-transferase	A	439	Porphyromonas gingivalis W83	Mutation(s): 0 Gene Names: abfT-2, PG_1956
UniProt
Find proteins for Q7MTJ6 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83)) Explore Q7MTJ6 Go to UniProtKB: Q7MTJ6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7MTJ6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.260 (Depositor), 0.260 (DCC)
R-Value Work: 0.199 (Depositor), 0.200 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.684	α = 90
b = 87.279	β = 90
c = 93.504	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
SnB	phasing
SOLVE	phasing
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-07-15

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2008-07-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2018-01-24
Changes: Database references, Structure summary
Version 1.4: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary