3CTP

Crystal structure of periplasmic binding protein/LacI transcriptional regulator from Alkaliphilus metalliredigens QYMF complexed with D-xylulofuranose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of periplasmic binding protein/LacI transcriptional regulator from Alkaliphilus metalliredigens QYMF complexed with L-xylulose.

Malashkevich, V.N.Toro, R.Wasserman, S.R.Meyer, A.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Periplasmic binding protein/LacI transcriptional regulator
A, B
330Alkaliphilus metalliredigens (strain QYMF)N/A
Find proteins for A6TKU5 (Alkaliphilus metalliredigens (strain QYMF))
Go to UniProtKB:  A6TKU5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
XLF
Query on XLF

Download SDF File 
Download CCD File 
A, B
beta-D-xylulofuranose
C5 H10 O5
LQXVFWRQNMEDEE-MROZADKFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.182 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 64.172α = 90.00
b = 61.903β = 104.81
c = 74.362γ = 90.00
Software Package:
Software NamePurpose
SHELXphasing
SCALEPACKdata scaling
SHELXDphasing
PDB_EXTRACTdata extraction
HKL-2000data reduction
MAR345data collection
DENZOdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-05-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description