3CNV

Crystal structure of the ligand-binding domain of a putative GntR-family transcriptional regulator from Bordetella bronchiseptica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.167 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the ligand-binding domain of a putative GntR-family transcriptional regulator from Bordetella bronchiseptica.

Zimmerman, M.D.Xu, X.Cui, H.Filippova, E.V.Savchenko, A.Edwards, A.M.Minor, W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative GntR-family transcriptional regulatorA, B, C, D162Bordetella bronchiseptica RB50Mutation(s): 0 
Gene Names: BB3683
UniProt
Find proteins for A0A0H3LYW6 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50))
Explore A0A0H3LYW6 
Go to UniProtKB:  A0A0H3LYW6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3LYW6
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.167 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.196α = 82.36
b = 58.071β = 86.52
c = 65.58γ = 68.31
Software Package:
Software NamePurpose
HKL-3000data collection
HKL-2000data reduction
HKL-3000phasing
MLPHAREphasing
DMmodel building
SHELXDphasing
ARP/wARPmodel building
REFMACrefinement
HKL-3000data reduction
HKL-2000data scaling
DMphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2011-10-05
    Changes: Structure summary
  • Version 1.3: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary