3CIS

The Crystal Structure of Rv2623 from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.251 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

The Crystal Structure of Rv2623 : a Novel, Tandem-Repeat Universal Stress Protein of Mycobacterium tuberculosis

Drumm, J.Mi, K.Bilder, P.Almo, S.C.Chan, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Uncharacterized protein
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
309Mycobacterium tuberculosisMutation(s): 0 
Gene Names: TB31.7
UniProt
Find proteins for P9WFD7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WFD7 
Go to UniProtKB:  P9WFD7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WFD7
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
AA [auth E],
BA [auth E],
EA [auth F],
FA [auth F],
IA [auth G],
AA [auth E],
BA [auth E],
EA [auth F],
FA [auth F],
IA [auth G],
JA [auth G],
K [auth A],
L [auth A],
MA [auth H],
NA [auth H],
O [auth B],
P [auth B],
S [auth C],
T [auth C],
W [auth D],
X [auth D]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
CA [auth F],
DA [auth F],
GA [auth G],
HA [auth G],
I [auth A],
CA [auth F],
DA [auth F],
GA [auth G],
HA [auth G],
I [auth A],
J [auth A],
KA [auth H],
LA [auth H],
M [auth B],
N [auth B],
Q [auth C],
R [auth C],
U [auth D],
V [auth D],
Y [auth E],
Z [auth E]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.251 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 172.975α = 90
b = 241.48β = 90
c = 241.659γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-17
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description
  • Version 1.3: 2018-01-24
    Changes: Structure summary
  • Version 1.4: 2020-07-29
    Changes: Database references, Derived calculations, Structure summary