Download MendeleyCrystal structure of putative carboxylesterase (NP_786266.1) from Lactobacillus plantarum at 1.70 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3BXP | pdb_00003bxp
CRYSTAL STRUCTURE OF A PUTATIVE CARBOXYLESTERASE (LP_2923) FROM LACTOBACILLUS PLANTARUM WCFS1 AT 1.70 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb3BXP/pdb
- Classification: HYDROLASE
- Organism(s): Lactiplantibacillus plantarum WCFS1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-01-14 Released: 2008-01-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.197 (Depositor), 0.210 (DCC)
- R-Value Work: 0.166 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.168 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative lipase/esterase | 277 | Lactiplantibacillus plantarum WCFS1 | Mutation(s): 0 Gene Names: NP_786266.1, lp_2923 |  | |
UniProt | |||||
Find proteins for F9US10 (Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)) Explore F9US10 Go to UniProtKB: F9US10 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F9US10 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | C [auth A], I [auth B] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| PGR Query on PGR | D [auth A], K [auth B], L [auth B] | R-1,2-PROPANEDIOL C3 H8 O2 DNIAPMSPPWPWGF-GSVOUGTGSA-N |  | ||
| PGO Query on PGO | E [auth A], F [auth A], G [auth A], J [auth B] | S-1,2-PROPANEDIOL C3 H8 O2 DNIAPMSPPWPWGF-VKHMYHEASA-N |  | ||
| CL Query on CL | H [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.197 (Depositor), 0.210 (DCC)
- R-Value Work: 0.166 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.168 (Depositor)
Diffraction Data: https://doi.org/10.18430/M33BXP
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.595 | α = 90 |
| b = 94.222 | β = 107.47 |
| c = 58.758 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SOLVE | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Released Date: 2008-01-29 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-01-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations - Version 1.5: 2024-10-30
Changes: Data collection, Structure summary
