3BVF

Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin

Kim, K.H.Cho, K.J.Lee, J.H.Shin, H.J.Yang, I.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ferritin
A, B, C, D, E, F
181Helicobacter pylori (strain J99 / ATCC 700824)Mutation(s): 0 
Gene Names: ftnA (pfr)
EC: 1.16.3.2
Find proteins for Q9ZLI1 (Helicobacter pylori (strain J99 / ATCC 700824))
Go to UniProtKB:  Q9ZLI1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
D, E, F
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
IPA
Query on IPA

Download SDF File 
Download CCD File 
A, B, C, D, E, F
ISOPROPYL ALCOHOL
2-PROPANOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
A, B, C, D, E, F
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.168 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 128.658α = 90.00
b = 128.658β = 90.00
c = 165.454γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
CNSphasing
HKL-2000data collection
HKL-2000data reduction
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-01-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance