3BV6

Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold

• PDB DOI: https://doi.org/10.2210/pdb3BV6/pdb

• Classification: HYDROLASE
• Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2008-01-04 Released: 2008-01-29 
• Deposition Author(s): Minasov, G., Shuvalova, L., Brunzelle, J.S., Yang, X., Collart, F.R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.208 
• R-Value Work: 0.167 
• R-Value Observed: 0.169 

Literature

Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold.

Minasov, G., Shuvalova, L., Brunzelle, J.S., Yang, X., Collart, F.R., Anderson, W.F.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 260.2 kDa 
• Atom Count: 20,576 
• Modelled Residue Count: 2,122 
• Deposited Residue Count: 2,274 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metal-dependent hydrolase	A, B, C, D, E, F	379	Vibrio cholerae O1 biovar El Tor str. N16961	Mutation(s): 0
UniProt
Find proteins for Q9KMS2 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KMS2  Go to UniProtKB:  Q9KMS2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE	G [auth A], H [auth A], I [auth B], J [auth B], K [auth C], L [auth C], M [auth D], N [auth D], O [auth E], P [auth E], Q [auth F], R [auth F]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.208 
• R-Value Work: 0.167 
• R-Value Observed: 0.169 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.433	α = 99.69
b = 94.839	β = 97.9
c = 94.591	γ = 116.13

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-01-29 
Deposition Author(s): Minasov, G., Shuvalova, L., Brunzelle, J.S., Yang, X., Collart, F.R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2008-01-29
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations