3BI5 | pdb_00003bi5

Crystal structures of fms1 in complex with its inhibitors

• PDB DOI: https://doi.org/10.2210/pdb3BI5/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-11-29 Released: 2008-01-01 
• Deposition Author(s): Huang, Q., Hao, Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.290 (Depositor), 0.244 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.232 (DCC) 

Starting Model: experimental

Literature

Crystal structures of fms1 in complex with its inhibitors

Huang, Q., Hao, Q.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 119.75 kDa 
• Atom Count: 7,975 
• Modeled Residue Count: 996 
• Deposited Residue Count: 1,032 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyamine oxidase FMS1	A, B	516	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: Fms1 EC: 1.5.3.11 (PDB Primary Data), 1.5.3.17 (UniProt)
UniProt
Find proteins for P50264 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P50264  Go to UniProtKB:  P50264

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD	C [auth A], E [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N
DIA	D [auth A], F [auth B]	OCTANE 1,8-DIAMINE C8 H20 N2 PWGJDPKCLMLPJW-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.290 (Depositor), 0.244 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.232 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 164.42	α = 90
b = 103.002	β = 94.3
c = 77.242	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-01-01 
Deposition Author(s): Huang, Q., Hao, Q.

Revision History  

• Version 1.0: 2008-01-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-04-03
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.3: 2024-10-30
  Changes: Structure summary