3BFF

class A beta-lactamase SED-G238C complexed with faropenem


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

acyl-intermediate structures of the class A beta-lactamase SED-G238C

Pernot, L.Petrella, S.Sougakoff, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Class A beta-lactamase Sed1A, B, C, D262Citrobacter sedlakiiMutation(s): 1 
Gene Names: bla-SED-1
EC: 3.5.2.6
Find proteins for Q93PQ0 (Citrobacter sedlakii)
Explore Q93PQ0 
Go to UniProtKB:  Q93PQ0
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SFR
Query on SFR

Download CCD File 
A, B, C, D
(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid
C12 H17 N O6 S
CGJDLFMMMJEANA-DAGMQNCNSA-N
 Ligand Interaction
FPM
Query on FPM

Download CCD File 
C
(5R,6S)-6-(1-hydroxyethyl)-7-oxo-3-[(2R)-oxolan-2-yl]-4-thia-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid
C12 H15 N O5 S
HGGAKXAHAYOLDJ-FHZUQPTBSA-N
 Ligand Interaction
SCN
Query on SCN

Download CCD File 
A, B, C, D
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.189 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 187.116α = 90
b = 73.244β = 121.69
c = 103.504γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
MOLREPphasing
CNSrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-12-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance