3BEY | pdb_00003bey

Crystal structure of the protein O27018 from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT217

PDB DOI: https://doi.org/10.2210/pdb3BEY/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Methanothermobacter thermautotrophicus str. Delta H
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-11-20 Released: 2007-12-18
Deposition Author(s): Kuzin, A.P., Gu, J., Xu, X., Neely, H., Forouhar, F., Owens, L., Mao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.258 (Depositor), 0.266 (DCC)
R-Value Work:
0.206 (Depositor), 0.218 (DCC)
R-Value Observed:
0.206 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the protein O27018 from Methanobacterium thermoautotrophicum.

Kuzin, A.P., Gu, J., Xu, X., Neely, H., Forouhar, F., Owens, L., Mao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 62.62 kDa
Atom Count: 4,082
Modeled Residue Count: 543
Deposited Residue Count: 576
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Conserved protein O27018	A, B, C, D, E A, B, C, D, E, F	96	Methanothermobacter thermautotrophicus str. Delta H	Mutation(s): 0 Gene Names: MTH935
UniProt
Find proteins for O27018 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)) Explore O27018 Go to UniProtKB: O27018
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O27018
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.258 (Depositor), 0.266 (DCC)
R-Value Work: 0.206 (Depositor), 0.218 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.528	α = 90
b = 71.985	β = 99.08
c = 61.418	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALA	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-12-18

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-12-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2018-01-24
Changes: Structure summary
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary