Biological Assembly 1  

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 86.28 kDa 
• Atom Count: 5,525 
• Modelled Residue Count: 698 
• Deposited Residue Count: 772 
• Unique protein chains: 1

 3BDK

Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue

• PDB DOI: 10.2210/pdb3BDK/pdb

• Classification: LYASE
• Organism(s): Streptococcus suis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-11-15 Released: 2008-11-18 
• Deposition Author(s): Gao, F., Zhang, Q.M., Peng, H., Liu, Y.W., Qi, J.X., Gao, G.F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.303 
• R-Value Work: 0.250 
• R-Value Observed: 0.253 

Literature

Crystal structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue

Gao, F., Zhang, Q.M., Peng, H., Liu, Y.W., Qi, J.X., Gao, G.F.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
D-mannonate dehydratase	A, B	386	Streptococcus suis	Mutation(s): 0  Gene Names: uxuA EC: 4.2.1.8
UniProt
Find proteins for A4VVI4 (Streptococcus suis (strain 05ZYH33)) Explore A4VVI4  Go to UniProtKB:  A4VVI4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DNO	C [auth A]	D-mannose C6 H12 O6 GZCGUPFRVQAUEE-KVTDHHQDSA-N
MN	D [auth A]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.303 
• R-Value Work: 0.250 
• R-Value Observed: 0.253 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.468	α = 90
b = 105.468	β = 90
c = 160.155	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-11-18 
Deposition Author(s): Gao, F., Zhang, Q.M., Peng, H., Liu, Y.W., Qi, J.X., Gao, G.F.

Revision History  

• Version 1.0: 2008-11-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance