3BCQ

Crystal structure of oxy-hemoglobin from Brycon cephalus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of oxy-hemoglobin from Brycon cephalus

Poy, C.D.Leopoldino, A.M.Rahal, P.de Azevedo, W.F.Rodriguez, G.O.B.Murakami, M.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha-chain hemoglobin
A, C
142Brycon cephalusMutation(s): 0 
Find proteins for A1YZP4 (Brycon cephalus)
Go to UniProtKB:  A1YZP4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-chain hemoglobin
B, D
146Brycon cephalusMutation(s): 0 
Find proteins for D0VWS2 (Brycon cephalus)
Go to UniProtKB:  D0VWS2
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OXY
Query on OXY

Download SDF File 
Download CCD File 
A, B, C, D
OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B, C, D
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.166 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 119.366α = 90.00
b = 54.039β = 113.89
c = 101.906γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
AMoREphasing
MAR345data collection
REFMACrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description