3BB8

E1 Dehydrase H220K Mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

E1 Dehydrase H220K Mutant

Smith, P.Szu, P.-H.Tsai, S.-C.Liu, H.-W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase
A, B
437Yersinia pseudotuberculosisMutation(s): 1 
Gene Names: ddhC (btrR, rfbH)
EC: 2.6.1.-
Find proteins for Q57323 (Yersinia pseudotuberculosis)
Go to UniProtKB:  Q57323
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PLP
Query on PLP

Download SDF File 
Download CCD File 
A, B
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
BEN
Query on BEN

Download SDF File 
Download CCD File 
A, B
BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.219 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 98.180α = 90.00
b = 98.180β = 90.00
c = 140.390γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
CNSphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data collection
PDB_EXTRACTdata extraction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2007-11-09 
  • Released Date: 2008-09-16 
  • Deposition Author(s): Tsai, S.-C., Smith, P.

Revision History 

  • Version 1.0: 2008-09-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description