3AOG

Crystal structure of glutamate dehydrogenase (GdhB) from Thermus thermophilus (Glu bound form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

An unique allosteric regulation revealed by crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus

Tomita, T.Kuzuyama, T.Nishiyama, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glutamate dehydrogenase
A, B, C, D, E, F, G, H, I, J, K, L
A, B, C, D, E, F, G, H, I, J, K, L
440Thermus thermophilus HB27Mutation(s): 0 
Gene Names: TT_C1211
EC: 1.4.1.3
UniProt
Find proteins for Q72IC1 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72IC1 
Go to UniProtKB:  Q72IC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72IC1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLU
Query on GLU

Download Ideal Coordinates CCD File 
AA [auth E],
BA [auth F],
CA [auth F],
FA [auth G],
GA [auth G],
AA [auth E],
BA [auth F],
CA [auth F],
FA [auth G],
GA [auth G],
IA [auth H],
JA [auth H],
LA [auth I],
M [auth A],
MA [auth I],
N [auth A],
PA [auth J],
Q [auth B],
QA [auth J],
R [auth B],
T [auth C],
TA [auth K],
U [auth C],
UA [auth K],
W [auth D],
WA [auth L],
X [auth D],
XA [auth L],
Z [auth E]
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
 Ligand Interaction
PO4
Query on PO4

Download Ideal Coordinates CCD File 
DA [auth F],
HA [auth G],
NA [auth I],
O [auth A],
OA [auth I],
DA [auth F],
HA [auth G],
NA [auth I],
O [auth A],
OA [auth I],
RA [auth J],
V [auth C],
VA [auth K],
Y [auth D]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NH4
Query on NH4

Download Ideal Coordinates CCD File 
EA [auth F],
KA [auth H],
P [auth A],
S [auth B],
SA [auth J],
EA [auth F],
KA [auth H],
P [auth A],
S [auth B],
SA [auth J],
YA [auth L]
AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.733α = 82.83
b = 106.546β = 87.18
c = 166.81γ = 70.6
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-09-07
    Type: Initial release