3AGT

Hemerythrin-like domain of DcrH (met)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Characteristics of Diiron Site with Large Cavity in Hemerythrin-like Domain of DcrH

Onoda, A.Okamoto, Y.Sugimoto, H.Mizohata, E.Inoue, T.Shiro, Y.Hayashi, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemerythrin-like domain protein DcrH
A, B
136Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)Mutation(s): 0 
Gene Names: dcrH
Find proteins for Q726F3 (Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303))
Go to UniProtKB:  Q726F3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CFO
Query on CFO

Download SDF File 
Download CCD File 
A, B
CHLORO DIIRON-OXO MOIETY
Cl Fe2 O
KBTPJIQAZMMQJH-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.203 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 33.311α = 95.27
b = 44.873β = 104.20
c = 48.127γ = 90.03
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data reduction
HKL-2000data scaling
SPACEdata collection
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-04-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-11
    Type: Refinement description