3AFI

Crystal structure of DBJA (HIS-DBJA)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.168 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering

Prokop, Z.Sato, Y.Brezovsky, J.Mozga, T.Chaloupkova, R.Koudelakova, T.Jerabek, P.Stepankova, V.Natsume, R.van Leeuwen, J.G.Janssen, D.B.Florian, J.Nagata, Y.Senda, T.Damborsky, J.

(2010) Angew Chem Int Ed Engl 49: 6111-6115


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Haloalkane dehalogenaseB [auth A],
C [auth B],
A [auth E],
D [auth F]
316Bradyrhizobium diazoefficiens USDA 110Mutation(s): 0 
Gene Names: DBJAdhaAblr1087
EC: 3.8.1.5
UniProt
Find proteins for P59337 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110))
Explore P59337 
Go to UniProtKB:  P59337
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP59337
Protein Feature View
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.168 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 212.855α = 90
b = 117.843β = 90
c = 55.796γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
CNSrefinement
REFMACrefinement
HKL-2000data reduction
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

  • Deposited Date: 2010-03-02 
  • Released Date: 2011-01-19 
  • Deposition Author(s): Sato, Y., Senda, T.

Revision History  (Full details and data files)

  • Version 1.0: 2011-01-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-11
    Changes: Refinement description