Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Dihedral - D2  (3D View)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 82.70 kDa 
• Atom Count: 5618 
• Residue Count: 664 
• Unique protein chains: 1

3WWY

The crystal structure of D-lactate dehydrogenase from Fusobacterium nucleatum subsp. nucleatum

• DOI: 10.2210/pdb3WWY/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Fusobacterium nucleatum subsp. nucleatum ATCC 25586
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-07-08 Released: 2015-07-08 
• Deposition Author(s): Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.196 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 

Literature

Allosteric D-lactate dehydrogenases from three Gram-negative bacteria

Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
D-lactate dehydrogenase	A, B	358	Fusobacterium nucleatum subsp. nucleatum ATCC 25586	Mutation(s): 0  Gene Names: FN0511 EC: 1.1.1.28
Find proteins for Q8RG11 (Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)) Explore Q8RG11  Go to UniProtKB:  Q8RG11

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	A, B	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	A, B	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.196 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.29	α = 90
b = 116.29	β = 90
c = 234.5	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2014-07-08 
• Released Date: 2015-07-08 
Deposition Author(s): Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.

Revision History 

• Version 1.0: 2015-07-08
  Type: Initial release