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Download EndnoteAllosteric D-lactate dehydrogenases from three Gram-negative bacteria
Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.To be published.
3WWY
The crystal structure of D-lactate dehydrogenase from Fusobacterium nucleatum subsp. nucleatum
- DOI: 10.2210/pdb3WWY/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
- Expression System: Escherichia coli
- Deposited: 2014-07-08 Released: 2015-07-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.196
- R-Value Work: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-lactate dehydrogenase | A, B | 358 | Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) | Mutation(s): 0 EC: 1.1.1.28 |
Find proteins for Q8RG11 (Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)) Go to UniProtKB: Q8RG11 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.196
- R-Value Work: 0.164
- Space Group: P 43 21 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 116.290 | α = 90.00 |
| b = 116.290 | β = 90.00 |
| c = 234.500 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| SCALA | data scaling |
| REFMAC | refinement |
| MOLREP | phasing |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Deposited Date: 2014-07-08
- Released Date: 2015-07-08
- Deposition Author(s): Furukawa, N., Togawa, M., Miyanaga, A., Nakajima, M., Taguchi, H.
Revision History
- Version 1.0: 2015-07-08
Type: Initial release
