396D | pdb_0000396d

CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC)

• PDB DOI: https://doi.org/10.2210/pdb396D/pdb
• NAKB: 396D

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 1998-04-29 Released: 1998-05-01 
• Deposition Author(s): Ban, C., Sundaralingam, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Work: 
  0.189 (Depositor) 
• R-Value Observed: 
  0.189 (Depositor) 

Literature

Crystal Structures of Two Isomophous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC)

Ban, C., Ramakrishnan, B., Sundaralingam, M.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3.05 kDa 
• Atom Count: 261 
• Modeled Residue Count: 10 
• Deposited Residue Count: 10 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*GP*CP*CP*GP*CP*GP*GP*CP*C)-3')	A	10	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Work:  0.189 (Depositor) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.05	α = 90
b = 39.05	β = 90
c = 82.15	γ = 120

Software Package:

Software Name	Purpose
X-PLOR	refinement
XENGEN	data reduction
XENGEN	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-05-01 
Deposition Author(s): Ban, C., Sundaralingam, M.

Revision History  

• Version 1.0: 1998-05-01
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-05-03
  Changes: Source and taxonomy, Structure summary
• Version 1.4: 2024-02-21
  Changes: Data collection, Database references