Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633
Akazaki, H., Kawai, F., Kumaki, Y., Sekine, K., Hakamata, W., Nishio, T., Park, S.-Y., Oku, T.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c554 | 103 | Vibrio parahaemolyticus RIMD 2210633 | Mutation(s): 0  Gene Names: VP2300 | ||
UniProt | |||||
Find proteins for Q87MF5 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87MF5  Go to UniProtKB:  Q87MF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87MF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEC Query on HEC | AB [auth R] CB [auth S] DB [auth T] EB [auth U] FB [auth V] | HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N | |||
GOL Query on GOL | BB [auth R], JA [auth C], MA [auth E], YA [auth P] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 84.949 | α = 71.5 |
b = 87.612 | β = 72.98 |
c = 103.847 | γ = 83.68 |
Software Name | Purpose |
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ADSC | data collection |
MOLREP | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |