2ZXD

alpha-L-fucosidase complexed with inhibitor, iso-6FNJ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis of alpha-fucosidase inhibition by iminocyclitols with K(i) values in the micro- to picomolar range.

Wu, H.J.Ho, C.W.Ko, T.P.Popat, S.D.Lin, C.H.Wang, A.H.

(2010) Angew.Chem.Int.Ed.Engl. 49: 337-340


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha-L-fucosidase, putative
A, B
455Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Mutation(s): 0 
Find proteins for Q9WYE2 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
Go to UniProtKB:  Q9WYE2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZXD
Query on ZXD

Download SDF File 
Download CCD File 
A, B
(2S,3R,4S,5R)-2-(1-methylethyl)piperidine-3,4,5-triol
C8 H17 N O3
WNBLNSHOIGFFFW-VGRMVHKJSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
ZXDKi: 6000 nM BINDINGMOAD
ZXDKi: 6000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.162 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 181.012α = 90.00
b = 181.012β = 90.00
c = 170.322γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
CNSrefinement
CNSphasing
BSSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-12-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance