Download MendeleyFunctional Analysis of Hyperthermophilic Endocellulase from the Archaeon Pyrococcus horikoshii
Kim, H.-W., Ishikawa, K.To be published.
2ZUN
Functional Analysis of Hyperthermophilic Endocellulase from the Archaeon Pyrococcus horikoshii
- PDB DOI: 10.2210/pdb2ZUN/pdb
- Classification: HYDROLASE
- Organism(s): Pyrococcus horikoshii OT3
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-10-21 Released: 2009-11-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225
- R-Value Work: 0.216
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 458aa long hypothetical endo-1,4-beta-glucanase | A, B, C | 458 | Pyrococcus horikoshii OT3 | Mutation(s): 0 Gene Names: EGPh, PH1171 EC: 3.2.1.4 |  |
UniProt | |||||
Find proteins for O58925 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58925 Go to UniProtKB: O58925 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O58925 | ||||
Protein Feature ViewExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | D, E, F, G, H, I D, E, F, G, H, I | 2 |  | N/A | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G84824ZO GlyCosmos: G84824ZO | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | J [auth A], K [auth A], L [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900005 Query on PRD_900005 | D, E, F, G, H, I | beta-cellobiose | Oligosaccharide / Metabolism |  | Ligand Interaction |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225
- R-Value Work: 0.216
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 162.157 | α = 90 |
| b = 58.404 | β = 109.22 |
| c = 138.332 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASES | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2009-11-03 Deposition Author(s): Kim, H.-W., Ishikawa, K.
Revision History (Full details and data files)
- Version 1.0: 2009-11-03
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
