Macromolecule Content

Total Structure Weight: 38.18 kDa
Atom Count: 2,570
Modelled Residue Count: 324
Deposited Residue Count: 339
Unique protein chains: 1

2ZOM

Crystal structure of CutA1 from Oryza sativa

PDB DOI: https://doi.org/10.2210/pdb2ZOM/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2008-05-23 Released: 2009-05-26
Deposition Author(s): Kezuka, Y., Bagautdinov, B., Katoh, S., Ohtake, Y., Yutani, K., Nonaka, T., Katoh, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.02 Å
R-Value Free: 0.267
R-Value Work: 0.178
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of CutA1 from Oryza sativa

Kezuka, Y., Bagautdinov, B., Katoh, S., Ohtake, Y., Yutani, K., Nonaka, T., Katoh, E.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein CutA, chloroplast, putative, expressed	A, B, C	113	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: CUTA1, Os10g0378300, LOC_Os10g23204, OsJ_31315
UniProt
Find proteins for Q109R6 (Oryza sativa subsp. japonica) Explore Q109R6 Go to UniProtKB: Q109R6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q109R6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain I [auth C] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain I [auth C]	E [auth A], G [auth B], I [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] SDF format, chain H [auth C] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain H [auth C]	D [auth A], F [auth B], H [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.02 Å
R-Value Free: 0.267
R-Value Work: 0.178
R-Value Observed: 0.182
Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.214	α = 90
b = 127.214	β = 90
c = 121.868	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-05-26

Deposition Author(s):

Bagautdinov, B.

Revision History (Full details and data files)

Version 1.0: 2009-05-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.