Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 35630.30 
• Atom Count: 2340 
• Residue Count: 317 
• Unique protein chains: 1

2ZO4

Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8

• DOI: 10.2210/pdb2ZO4/pdb

• Classification: HYDROLASE
• Organism(s): Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
• Expression System: Escherichia coli


• Deposited: 2008-05-05 Released: 2009-03-17 
• Deposition Author(s): Yamamura, A., Nagata, K., Agari, Y., Ebihara, A., Nakagawa, N., Yokoyama, S., Kuramitsu, S., Tanokura, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.1 Å
• R-Value Free: 0.257 
• R-Value Work: 0.198 

Literature

Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.

Yamamura, A., Ohtsuka, J., Kubota, K., Agari, Y., Ebihara, A., Nakagawa, N., Nagata, K., Tanokura, M.

(2008) Proteins 73: 1053-1057

• PubMed: 18767153 
• DOI: 10.1002/prot.22215

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Metallo-beta-lactamase family protein	A	317	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0
Find proteins for Q5SIE5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB:  Q5SIE5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ZN	A	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.1 Å
• R-Value Free: 0.257 
• R-Value Work: 0.198 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 55.286	α = 90.00
b = 62.885	β = 90.00
c = 87.425	γ = 90.00

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
HKL-2000	data collection
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2008-05-05 
• Released Date: 2009-03-17 
• Deposition Author(s): Yamamura, A., Nagata, K., Agari, Y., Ebihara, A., Nakagawa, N., Yokoyama, S., Kuramitsu, S., Tanokura, M.

Revision History 

• Version 1.0: 2009-03-17
  Type: Initial release
• Version 1.1: 2011-07-13
  Type: Source and taxonomy, Version format compliance