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Download EndnoteCrystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8
Manzoku, M., Ebihara, A., Fujimoto, Y., Yokoyama, S., Kuramitsu, S.To be published.
2ZBT
Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8
- DOI: 10.2210/pdb2ZBT/pdb
- Classification: LYASE
- Organism(s): Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2007-10-29 Released: 2007-12-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.210
- R-Value Work: 0.194
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Pyridoxal biosynthesis lyase pdxS | A, B, C, D | 297 | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Mutation(s): 0 Gene Names: pdxS EC: 4.3.3.6 |
Find proteins for Q5SKD9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: Q5SKD9 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | A, B, C, D | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.210
- R-Value Work: 0.194
- Space Group: H 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 180.970 | α = 90.00 |
| b = 180.970 | β = 90.00 |
| c = 100.750 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Deposited Date: 2007-10-29
- Released Date: 2007-12-18
- Deposition Author(s): Manzoku, M., Ebihara, A., Fujimoto, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
