Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8
Manzoku, M., Ebihara, A., Fujimoto, Y., Yokoyama, S., Kuramitsu, S.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Pyridoxal biosynthesis lyase pdxS | A, B, C, D | 297 | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Gene Names: pdxS EC: 4.3.3.6 |
Find proteins for Q5SKD9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB:  Q5SKD9 |
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | A, B, C, D | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | ![]() |  Ligand Interaction |
Length (Å) | Angle (°) |
---|---|
a = 180.970 | α = 90.00 |
b = 180.970 | β = 90.00 |
c = 100.750 | γ = 120.00 |
Software Name | Purpose |
---|---|
CNS | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
SOLVE | phasing |