2Z83

Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8

PDB DOI: https://doi.org/10.2210/pdb2Z83/pdb

Classification: VIRAL PROTEIN
Organism(s): Japanese encephalitis virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-08-30 Released: 2008-03-04
Deposition Author(s): Yamashita, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.249
R-Value Work: 0.199
R-Value Observed: 0.202

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Catalytic Domain of Japanese Encephalitis Virus NS3 Helicase/Nucleoside Triphosphatase at a Resolution 1.8

Yamashita, T., Unno, H., Mori, Y., Tani, H., Moriishi, K., Takamizawa, A., Agoh, M., Tsukihara, T., Matsuura, Y.

To be published.

Macromolecule Content

Total Structure Weight: 51.68 kDa
Atom Count: 3,775
Modelled Residue Count: 426
Deposited Residue Count: 459
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Helicase/Nucleoside Triphosphatase	A	459	Japanese encephalitis virus	Mutation(s): 0
UniProt
Find proteins for P27395 (Japanese encephalitis virus (strain SA-14)) Explore P27395 Go to UniProtKB: P27395
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P27395
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.249
R-Value Work: 0.199
R-Value Observed: 0.202
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.062	α = 90
b = 68.024	β = 116.87
c = 65.219	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-03-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-03-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.