2YY5

Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae

Ishii, T., Bessho, Y., Yokoyama, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tryptophanyl-tRNA synthetase
A, B, C, D
348Mycoplasma pneumoniae (strain ATCC 29342 / M129)Mutation(s): 1 
Gene Names: trpS
EC: 6.1.1.2
Find proteins for P75510 (Mycoplasma pneumoniae (strain ATCC 29342 / M129))
Go to UniProtKB:  P75510
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
WSA
Query on WSA
Download SDF File 
Download CCD File 
A, B, C, D
5'-O-[(L-TRYPTOPHYLAMINO)SULFONYL]ADENOSINE
C21 H24 N8 O7 S
RQAVKMXDGHWLGD-BFNSABJLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.192 
  • Space Group: P 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 88.163α = 90.00
b = 52.109β = 96.05
c = 194.092γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-2000data scaling
MOLREPphasing
HKL-2000data reduction
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-04-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance