2YPJ
Non-catalytic carbohydrate binding module CBM65B
- PDB DOI: https://doi.org/10.2210/pdb2YPJ/pdb
- Classification: HYDROLASE
- Organism(s): [Eubacterium] cellulosolvens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2012-10-30 Released: 2012-12-19 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.280 
- R-Value Work: 0.224 
- R-Value Observed: 0.227 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ENDOGLUCANASE CEL5A | 155 | [Eubacterium] cellulosolvens | Mutation(s): 0  EC: 3.2.1.4 | ||
UniProt | |||||
Find proteins for Q3LHN3 (Eubacterium cellulosolvens) Explore Q3LHN3  Go to UniProtKB:  Q3LHN3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3LHN3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | B | 7 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G24181CY GlyCosmos:  G24181CY |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.280 
- R-Value Work: 0.224 
- R-Value Observed: 0.227 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.92 | α = 90 |
b = 57.92 | β = 90 |
c = 116.74 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2012-12-19  Deposition Author(s): Luis, A.S., Venditto, I., Prates, J.A.M., Ferreira, L.M.A., Temple, M.J., Rogowski, A., Basle, A., Xue, J., Knox, J.P., Gilbert, H.J., Fontes, C.M.G.A., Najmudin, S.
Revision History (Full details and data files)
- Version 1.0: 2012-12-19
Type: Initial release - Version 1.1: 2013-01-30
Changes: Database references - Version 1.2: 2013-02-27
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary