Macromolecule Content

Total Structure Weight: 35.23 kDa
Atom Count: 2,568
Modelled Residue Count: 293
Deposited Residue Count: 307
Unique protein chains: 1

2YIY

Crystal structure of compound 8 bound to TAK1-TAB

PDB DOI: 10.2210/pdb2YIY/pdb

Classification: TRANSFERASE/TRANSFERASE ACTIVATOR
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2011-05-17 Released: 2012-05-23
Deposition Author(s): Brown, D.G., Phillips, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.245
R-Value Work: 0.188
R-Value Observed: 0.191

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

The Discovery and Synthesis of Selective Dfg-Out Tak-1 Inhibitors

Green, M.P., Bell, A., Bess, K., Brown, D.G., Campany, K., Dodd, P., Hewson, C., Hughes, S.J., Kilty, I., Phillips, C., Smith, R.T., Hoorn, W.V., Jones, L.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7, TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1	A	307	Homo sapiens	Mutation(s): 0 Gene Names: TAB1, MAP3K7IP1, MAP3K7, TAK1 EC: 2.7.11.25
UniProt & NIH Common Fund Data Resources
Find proteins for Q15750 (Homo sapiens) Explore Q15750 Go to UniProtKB: Q15750
PHAROS: Q15750
Find proteins for O43318 (Homo sapiens) Explore O43318 Go to UniProtKB: O43318
PHAROS: O43318
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	O43318Q15750
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
YIY Query on YIY Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	(1E)-1-[5-TERT-BUTYL-2-(3-FLUOROPHENYL)-1H-PYRAZOL-3-YLIDENE]-3-(4-PYRIDIN-3-YLOXYPHENYL)UREA C₂₅ H₂₄ F N₅ O₂ VWGLIDHWYMNSEW-BYNJWEBRSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å
R-Value Free: 0.245
R-Value Work: 0.188
R-Value Observed: 0.191
Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.401	α = 90
b = 133.422	β = 90
c = 145.769	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2012-05-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-05-23
Type: Initial release
Version 1.1: 2019-03-27
Changes: Data collection, Other, Source and taxonomy

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.