2XHF

Crystal structure of peroxiredoxin 5 from Alvinella pompejana

• PDB DOI: https://doi.org/10.2210/pdb2XHF/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Alvinella pompejana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-06-15 Released: 2011-07-06 
• Deposition Author(s): Smeets, A., Declercq, J.P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.184 
• R-Value Work: 0.150 
• R-Value Observed: 0.152 

Literature

Crystal Structure of Peroxiredoxin 5 from Alvinella Pompejana

Smeets, A., Knoops, B., Declercq, J.P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 38.54 kDa 
• Atom Count: 2,814 
• Modelled Residue Count: 310 
• Deposited Residue Count: 342 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PEROXIREDOXIN 5	A, B	171	Alvinella pompejana	Mutation(s): 0  EC: 1.11.1.15
UniProt
Find proteins for G1K3P1 (Alvinella pompejana) Explore G1K3P1  Go to UniProtKB:  G1K3P1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.184 
• R-Value Work: 0.150 
• R-Value Observed: 0.152 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.54	α = 90
b = 92.92	β = 109.55
c = 49.34	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-07-06 
Deposition Author(s): Smeets, A., Declercq, J.P.

Revision History  

• Version 1.0: 2011-07-06
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2019-05-08
  Changes: Data collection, Experimental preparation, Other
• Version 1.3: 2019-07-24
  Changes: Data collection
• Version 1.4: 2023-12-20
  Changes: Data collection, Database references, Other, Refinement description