2WWS | pdb_00002wws

Physalis Mottle Virus: Natural Empty Capsid

PDB DOI: https://doi.org/10.2210/pdb2WWS/pdb

Classification: VIRUS
Organism(s): Physalis mottle virus
Expression System: Nicotiana glutinosa
Mutation(s): No

Deposited: 2009-10-27 Released: 2010-11-03
Deposition Author(s): Sagurthi, S.R., Rajaram, V., Savithri, H.S., Murthy, M.R.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.90 Å
R-Value Free:
0.242 (Depositor)
R-Value Work:
0.230 (Depositor), 0.546 (DCC)
R-Value Observed:
0.230 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the Physalis Mottle Virus

Sagurthi, S.R., Rajaram, V., Savithri, H.S., Murthy, M.R.N.

To be published.

Macromolecule Content

Total Structure Weight: 59.97 kDa
Atom Count: 3,976
Modeled Residue Count: 531
Deposited Residue Count: 564
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
COAT PROTEIN	A, B, C	188	Physalis mottle virus	Mutation(s): 0
UniProt
Find proteins for P36351 (Physalis mottle virus) Explore P36351 Go to UniProtKB: P36351
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36351
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.90 Å
R-Value Free: 0.242 (Depositor)
R-Value Work: 0.230 (Depositor), 0.546 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 325.76	α = 90
b = 325.76	β = 90
c = 738.94	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-11-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-11-03
Type: Initial release
Version 1.1: 2011-07-07
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-05-08
Changes: Data collection, Database references, Derived calculations, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.