2WB0

2.1 resolution structure of the C-terminal domain of the human adenovirus 5 ssDNA binding protein

PDB DOI: https://doi.org/10.2210/pdb2WB0/pdb
Entry: 2WB0 supersedes: 1ADT

Classification: DNA BINDING PROTEIN
Organism(s): Human adenovirus 5
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2009-02-19 Released: 2010-03-31
Deposition Author(s): Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.245
R-Value Work: 0.184
R-Value Observed: 0.187

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

High Resolution Structures of the Adenovirus Single-Stranded DNA Binding Protein and the N512P Hinge-Region Mutant

Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

To be published.

Macromolecule Content

Total Structure Weight: 40.03 kDa
Atom Count: 2,862
Modelled Residue Count: 314
Deposited Residue Count: 356
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E2A DNA-BINDING PROTEIN	A [auth X]	356	Human adenovirus 5	Mutation(s): 0 Gene Names: DBP
UniProt
Find proteins for P03265 (Human adenovirus C serotype 5) Explore P03265 Go to UniProtKB: P03265
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03265
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [auth X] SDF format, chain B [auth X] MOL2 format, chain C [auth X] MOL2 format, chain B [auth X]	B [auth X], C [auth X]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.245
R-Value Work: 0.184
R-Value Observed: 0.187
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.29	α = 90
b = 76.66	β = 90
c = 64.69	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-03-31

Deposition Author(s):

Kanellopoulos, P.N.

This entry supersedes: 1ADT

Revision History (Full details and data files)

Version 1.0: 2010-03-31
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2019-07-24
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.