Biological Assembly 1  

 3D View: Structure | Electron Density

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 9-mer - A3BC1DE Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 9-mer - A6B1CD 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 404.95 kDa 
• Atom Count: 23874 
• Residue Count: 3138 
• Unique protein chains: 5

2W6J

Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration: Hydration State 5.

• DOI: 10.2210/pdb2W6J/pdb

• Classification: HYDROLASE
• Organism(s): Bos taurus
• Mutation(s): No 


• Deposited: 2008-12-18 Released: 2009-10-27 
• Deposition Author(s): Sanchez-Weatherby, J., Felisaz, F., Gobbo, A., Huet, J., Ravelli, R.B.G., Bowler, M.W., Cipriani, F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.84 Å
• R-Value Work: 0.305 
• R-Value Observed: 0.305 

Literature

Improving diffraction by humidity control: a novel device compatible with X-ray beamlines.

Sanchez-Weatherby, J., Bowler, M.W., Huet, J., Gobbo, A., Felisaz, F., Lavault, B., Moya, R., Kadlec, J., Ravelli, R.B., Cipriani, F.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1237-1246

• PubMed: 19966409 
• DOI: 10.1107/S0907444909037822
• Structures With Same Primary Citation


• PubMed Abstract: 
  

Dehydration of protein crystals is rarely used, despite being a post-crystallization method that is useful for the improvement of crystal diffraction properties, as it is difficult to reproduce and monitor. A novel device for hydration control of macromolecular crystals in a standard data-collection environment has been developed. The device delivers an air stream of precise relative humidity that can be used to alter the amount of water in macromolecular crystals. The device can be rapidly installed and is fully compatible with most standard synchrotron X-ray beamlines. Samples are mounted in cryoloops and the progress of dehydration can be monitored both optically and by the acquisition of diffraction images. Once the optimal hydration level has been obtained, cryocooling is easy to achieve by hand or by using a sample changer. The device has been thoroughly tested on several ESRF beamlines and is available to users.

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Organizational Affiliation: 

Diamond Light Source Ltd, Diamond House DR1.40, Harwell Science and Innovation Campus, RAL, Chilton, Didcot, Oxfordshire OX11 0DE, England. [e-mail]

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL	A, B, C	553	Bos taurus	Mutation(s): 0  Gene Names: ATP5F1A, ATP5A1, ATP5A2 EC: 3.6.3.14
Find proteins for P19483 (Bos taurus) Go to UniProtKB:  P19483

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL	D, E, F	528	Bos taurus	Mutation(s): 0  Gene Names: ATP5F1B, ATP5B EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Find proteins for P00829 (Bos taurus) Go to UniProtKB:  P00829

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL	G	298	Bos taurus	Mutation(s): 0  Gene Names: ATP5F1C, ATP5C, ATP5C1 EC: 3.6.3.14
Find proteins for P05631 (Bos taurus) Go to UniProtKB:  P05631

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
F1-ATPASE DELTA SUBUNIT	H	168	Bos taurus	Mutation(s): 0  Gene Names: ATP5F1D, ATP5D EC: 3.6.3.14
Find proteins for P05630 (Bos taurus) Go to UniProtKB:  P05630

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL	I	51	Bos taurus	Mutation(s): 0  Gene Names: ATP5F1E, ATP5E EC: 3.6.3.14
Find proteins for P05632 (Bos taurus) Go to UniProtKB:  P05632

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.84 Å
• R-Value Work: 0.305 
• R-Value Observed: 0.305 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.93	α = 90
b = 124.07	β = 90
c = 264.46	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2008-12-18 
• Released Date: 2009-10-27 
Deposition Author(s): Sanchez-Weatherby, J., Felisaz, F., Gobbo, A., Huet, J., Ravelli, R.B.G., Bowler, M.W., Cipriani, F.

Revision History 

• Version 1.0: 2009-10-27
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-01-16
  Changes: Data collection, Database references