2VWR | pdb_00002vwr

Crystal structure of the second pdz domain of numb-binding protein 2

PDB DOI: https://doi.org/10.2210/pdb2VWR/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2008-06-26 Released: 2008-09-16
Deposition Author(s): Roos, A.K., Guo, K., Burgess-Brown, N., Yue, W.W., Elkins, J.M., Pike, A.C.W., Filippakopoulos, P., Arrowsmith, C.H., Wikstom, M., Edwards, A., von Delft, F., Bountra, C., Doyle, D., Oppermann, U.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.177 (Depositor), 0.215 (DCC)
R-Value Work:
0.134 (Depositor)
R-Value Observed:
0.136 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of the Second Pdz Domain of the Human Numb-Binding Protein 2

Roos, A.K., Guo, K., Burgess-Brown, N., Yue, W.W., Elkins, J.M., Pike, A.C.W., Filippakopoulos, P., Arrowsmith, C.H., Wikstom, M., Edwards, A., von Delft, F., Bountra, C., Doyle, D., Oppermann, U.

To be published.

Macromolecule Content

Total Structure Weight: 10.31 kDa
Atom Count: 829
Modeled Residue Count: 95
Deposited Residue Count: 95
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LIGAND OF NUMB PROTEIN X 2	A	95	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N448 (Homo sapiens) Explore Q8N448 Go to UniProtKB: Q8N448
PHAROS: Q8N448 GTEx: ENSG00000139517
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8N448
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.177 (Depositor), 0.215 (DCC)
R-Value Work: 0.134 (Depositor)
R-Value Observed: 0.136 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.773	α = 90
b = 38.643	β = 117.22
c = 38.186	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-09-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-09-16
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-01-24
Changes: Database references, Structure summary
Version 1.4: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description