2V90

Crystal structure of the 3rd PDZ domain of intestine- and kidney- enriched PDZ domain IKEPP (PDZD3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of the 3Rd Pdz Domain of Intestine- and Kidney-Enriched Pdz Domain Ikepp (Pdzd3)

Uppenberg, J.Gileadi, C.Phillips, C.Elkins, J.Bunkoczi, G.Cooper, C.Pike, A.C.W.Salah, E.Ugochukwu, E.Arrowsmith, C.H.Edwards, A.Sundstrom, M.Weigelt, J.Doyle, D.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PDZ DOMAIN-CONTAINING PROTEIN 3A, B, C, D, E, F96Homo sapiensMutation(s): 0 
Gene Names: PDZD3IKEPPNHERF4PDZK2DLNB27
Find proteins for Q86UT5 (Homo sapiens)
Explore Q86UT5 
Go to UniProtKB:  Q86UT5
NIH Common Fund Data Resources
PHAROS  Q86UT5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.196 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.15α = 90
b = 97.95β = 99.59
c = 59.5γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2018-02-28
    Changes: Source and taxonomy
  • Version 1.3: 2020-03-04
    Changes: Derived calculations, Other