2UZG

Zf-UBP domain of VDU1

• PDB DOI: https://doi.org/10.2210/pdb2UZG/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-04-27 Released: 2007-05-08 
• Deposition Author(s): Allen, M.D., Bycroft, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: NO VIOLATIONS 

Literature

The Solution Structure of the Znf Ubp Domain of Usp33/Vdu1.

Allen, M.D., Bycroft, M.

(2007) Protein Sci 16: 2072

• PubMed: 17766394 
• DOI: https://doi.org/10.1110/ps.072967807
• Primary Citation of Related Structures:  
  2UZG


• PubMed Abstract: 
  

  USP33/VDU1 is a deubiquitinating enzyme that binds to the von Hippel-Lindau tumor suppressor protein. It also regulates thyroid hormone activation by deubiquitinating type 2 iodothyronine deiodinase. USP33/VDU1 contains a ZF UBP domain, a protein module found in many proteins in the ubiquitin-proteasome system. Several ZF UBP domains have been shown to bind ubiquitin, and a structure of a complex of the ZF UBP domain of isoT/USP5 and ubiquitin is available. In the present work, the solution structure of the ZF UBP domain of USP33/VDU1 has been determined by NMR spectroscopy. The structure differs from that of the USP5 domain, which contains only one of the three Zn ions present in the USP33/VDU1 structure. The USP33/VDU1 ZnF UBP domain does not bind to ubiquitin.

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Organizational Affiliation: 

Medical Research Council, The MRC Centre for Protein Engineering, Cambridge CB2 2QH, United Kingdom.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 11.12 kDa 
• Atom Count: 754 
• Modelled Residue Count: 95 
• Deposited Residue Count: 97 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 33	A	97	Homo sapiens	Mutation(s): 0  EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TEY7 (Homo sapiens) Explore Q8TEY7  Go to UniProtKB:  Q8TEY7
PHAROS:  Q8TEY7 GTEx:  ENSG00000077254

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A], D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: NO VIOLATIONS 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-08 
Deposition Author(s): Allen, M.D., Bycroft, M.

Revision History  

• Version 1.0: 2007-05-08
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-01-24
  Changes: Source and taxonomy
• Version 1.4: 2024-05-15
  Changes: Data collection, Database references, Derived calculations, Other